常用生信分析軟件
阿新 • • 發佈:2018-11-03
soft sof protected soa .net org min -o too
官網 | 源碼 | 安裝&使用 | |
BWA | http://bio-bwa.sourceforge.net/ | https://sourceforge.net/projects/bio-bwa/files/ |
http://www.cnblogs.com/leezx/p/5601525.html http://cncbi.github.io/BWA-Manual-CN/ |
Minimap2 | https://lh3.github.io/minimap2/ | https://github.com/lh3/minimap2 | https://github.com/lh3/minimap2/blob/master/README.md |
Samtools | http://www.htslib.org/ |
https://github.com/samtools/samtools |
http://www.htslib.org/download/ http://www.htslib.org/doc/samtools.html https://davetang.org/wiki/tiki-index.php?page=SAMTools |
Picard | http://broadinstitute.github.io/picard/ | https://github.com/broadinstitute/picard |
http://broadinstitute.github.io/picard/ http://broadinstitute.github.io/picard/command-line-overview.html |
GATK 3.8 | https://software.broadinstitute.org/gatk/ | https://github.com/broadgsa/gatk-protected | https://software.broadinstitute.org/gatk/documentation/quickstart?v=3 |
GATK 4.0 | https://software.broadinstitute.org/gatk/ | https://github.com/broadinstitute/gatk | https://github.com/broadinstitute/gatk |
Biobambam2 | https://github.com/gt1/biobambam2 |
https://github.com/gt1/biobambam2 | https://github.com/gt1/biobambam2 |
vcftools | https://vcftools.github.io/index.html | https://github.com/vcftools/vcftools |
https://vcftools.github.io/documentation.html https://vcftools.github.io/man_latest.html |
SOAPdenovo2 |
ftp://public.genomics.org.cn/BGI/SOAPdenovo2 http://soap.genomics.org.cn/soapdenovo.html |
https://github.com/aquaskyline/SOAPdenovo2 | http://soap.genomics.org.cn/soapdenovo.html |
常用生信分析軟件