【Python學習系列二十七】pearson相關係數計算
阿新 • • 發佈:2019-01-01
場景:計算訓練特徵和目標之間的相關係數,用於判斷是否加入訓練。
參考程式碼:
# -*- coding: utf-8 -*- import pandas as pd import time from sklearn import tree import numpy as np from sklearn import metrics from sklearn.linear_model import LinearRegression from scipy.stats import pearsonr from sklearn.feature_selection import SelectKBest from sklearn.feature_selection import f_regression def main(): #載入標記資料 label_ds=pd.read_csv(r"link_train_0726.txt",sep='\t',encoding='utf8',\ names=['link_id','length','width','link_class','start_date','week','time_interval','time_slot','travel_time',\ 'avg_travel_time','sd_travel_time','inlinks_num','outlinks_num']) label_ds["link_id"] = label_ds["link_id"].astype("string") label_ds["length"] = label_ds["length"].astype("int") label_ds["width"] = label_ds["width"].astype("int") label_ds["link_class"] = label_ds["link_class"].astype("int") label_ds["start_date"] = label_ds["start_date"].astype("string") label_ds["week"] = label_ds["week"].astype("int") label_ds["time_interval"] = label_ds["time_interval"].astype("string") label_ds["time_slot"] = label_ds["time_slot"].astype("int") label_ds["travel_time"] = label_ds["travel_time"].astype("float") label_ds["avg_travel_time"] = label_ds["avg_travel_time"].astype("float") label_ds["sd_travel_time"] = label_ds["sd_travel_time"].astype("float") label_ds["inlinks_num"] = label_ds["inlinks_num"].astype("int") label_ds["outlinks_num"] = label_ds["outlinks_num"].astype("int") #載入預測資料 unlabel_ds=pd.read_csv(r"link_test_0726.txt",sep='\t',encoding='utf8',\ names=['link_id','length','width','link_class','start_date','week','time_interval','time_slot',\ 'avg_travel_time','sd_travel_time','inlinks_num','outlinks_num']) unlabel_ds["link_id"] = unlabel_ds["link_id"].astype("string") unlabel_ds["length"] = unlabel_ds["length"].astype("int") unlabel_ds["width"] = unlabel_ds["width"].astype("int") unlabel_ds["link_class"] = unlabel_ds["link_class"].astype("int") unlabel_ds["start_date"] = unlabel_ds["start_date"].astype("string") unlabel_ds["week"] = unlabel_ds["week"].astype("int") unlabel_ds["time_interval"] = unlabel_ds["time_interval"].astype("string") unlabel_ds["time_slot"] = unlabel_ds["time_slot"].astype("int") unlabel_ds["avg_travel_time"] = unlabel_ds["avg_travel_time"].astype("float") unlabel_ds["sd_travel_time"] = unlabel_ds["sd_travel_time"].astype("float") unlabel_ds["inlinks_num"] = unlabel_ds["inlinks_num"].astype("int") unlabel_ds["outlinks_num"] = unlabel_ds["outlinks_num"].astype("int") #提取訓練集、驗證集、測試集 train_df=label_ds.loc[(pd.to_datetime(label_ds["start_date"])<'2016-06-01')]#訓練集 print "訓練集,有", train_df.shape[0], "行", train_df.shape[1], "列" valid_df=label_ds.loc[(pd.to_datetime(label_ds["start_date"])>='2016-06-01')]#驗證集train_df.sample(frac=0.2) print "驗證集,有", valid_df.shape[0], "行", valid_df.shape[1], "列" test_df=unlabel_ds#測試集 print "測試集,有", test_df.shape[0], "行", test_df.shape[1], "列" #特徵選擇 p_X=train_df['outlinks_num']#訓練屬性 p_Y=train_df['travel_time']#目標屬性 p_value=pearsonr(p_X,p_Y) print p_value #選擇相關性最強的k個特徵參與訓練 #k_feature = f_regression(p_X,p_Y) #k_fearture=SelectKBest(lambda X, Y: np.array(map(lambda x:pearsonr(x, Y), X.T)).T, k=9).fit_transform(p_X, p_Y) #print k_fearture #模型訓練 train_X=train_df[['length','width','link_class','week','time_slot','avg_travel_time']] train_y = train_df['travel_time']#標記 model_lr=LinearRegression()#tree.DecisionTreeRegressor() model_lr.fit(train_X, train_y) #模型驗證 valid_X=valid_df[['length','width','link_class','week','time_slot','avg_travel_time']] valid_y=valid_df['travel_time'] pre_valid_y=model_lr.predict(valid_X) abs_y=abs(pre_valid_y-valid_y) abs_error=abs_y.sum()#求和 #abs_error=sum(list(abs_y))#求和 print "mape:",abs_error/valid_df.shape[0] print "RMSE:",np.sqrt(metrics.mean_squared_error(valid_y, pre_valid_y))#均方差,模型評估 #模型預測 test_X = test_df[['length','width','link_class','week','time_slot','avg_travel_time']] test_info = test_df[['link_id','start_date','time_interval']] test_X=test_X.fillna(0)#空值替換為0 test_y=model_lr.predict(test_X) pre_test_y=pd.DataFrame(test_y,columns=['travel_time']) outset=test_info.join(pre_test_y,how='left')#輸出結果 #outset["travel_time"]=outset["travel_time"].apply(lambda x: '{0:.3f}'.format(x)) outset.to_csv('outit.txt',sep='#',index=False,header=None)#輸出預測資料 #執行 if __name__ == '__main__': start = time.clock() main() end = time.clock() print('finish all in %s' % str(end - start))
pearsonx函式的說明:https://docs.scipy.org/doc/scipy/reference/generated/scipy.stats.pearsonr.html
scikit-learn庫中:f_regression和SelectKBest用於選擇最佳特徵訓練,可以批量給出前k個特徵。